make.family: Make a family

In UMN-BarleyOatSilphium/GSSimTPUpdate: Code and data to accompany the publication [TITLE]

Description

Make a family

Usage

make.family(genome, parent1.genome, parent2.genome, N, generations,
  pop.type = "random", cycle.number, family.number, mutate = TRUE,
  mutation.rate.snp, mutation.rate.qtl)

Arguments

genome	The list of hypred genomes.
parent1.genome	A 2 x m matrix of the parent 1 haploid genomes.
parent2.genome	See parent1.genome
N	The number of F_1 individuals to generate.
generations	The number of selfing generations of single-seed descent. For instance generations = 5 would results in an F_6 population. For each generation, each of the F_1 individuals results in a single new individual that has undergone an additional generation of inbreeding
pop.type	The type of population to generate. Can be "inbred" or "random" (default).
cycle.number	The integer number of the breeding cycle.
family.number	The integer number of the family.
mutate	A logical as to generate random mutations when recombining.
mutation.rate.snp	The per-base mutation rate of the SNPs.
mutation.rate.qtl	The per-base mutation rate of the QTL.

UMN-BarleyOatSilphium/GSSimTPUpdate documentation built on May 9, 2019, 7:40 p.m.