Generates value measures on the population of interest. The values can be the genotypic values (sum of the a values at each qtl) or the phenoypic values (genotypic values + error)

1 2 | ```
phenotype.population(genome, haploid.genos, V_E, V_e,
just.geno.values = FALSE, n.env, n.rep, run.anova = FALSE)
``` |

`genome` |
The hypred genome. |

`haploid.genos` |
A 2n x m matrix of haploid alleles at m loci for n individuals. |

`V_E` |
The variance of the distribution from which to draw environmental effects. |

`V_e` |
The variance of the distribution from which to draw residual effects. |

`just.geno.values` |
Logical whether to just return the genotypic values. |

`n.rep` |
The number of replicates of each individual in each environment. |

`run.anova` |
Logical whether to run an anova of the simulated phenotypes. This is useful to verify that the target heritability is being achieved. |

`n.evn` |
The number of environments to "phenotype" the population. |

UMN-BarleyOatSilphium/GSSimTPUpdate documentation built on May 9, 2019, 7:40 p.m.

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