phenotype.population: Generate phenotypic values

In UMN-BarleyOatSilphium/GSSimTPUpdate: Code and data to accompany the publication [TITLE]

Description

Generates value measures on the population of interest. The values can be the genotypic values (sum of the a values at each qtl) or the phenoypic values (genotypic values + error)

Usage

phenotype.population(genome, haploid.genos, V_E, V_e,
  just.geno.values = FALSE, n.env, n.rep, run.anova = FALSE)

Arguments

genome	The hypred genome.
haploid.genos	A 2n x m matrix of haploid alleles at m loci for n individuals.
V_E	The variance of the distribution from which to draw environmental effects.
V_e	The variance of the distribution from which to draw residual effects.
just.geno.values	Logical whether to just return the genotypic values.
n.rep	The number of replicates of each individual in each environment.
run.anova	Logical whether to run an anova of the simulated phenotypes. This is useful to verify that the target heritability is being achieved.
n.evn	The number of environments to "phenotype" the population.

UMN-BarleyOatSilphium/GSSimTPUpdate documentation built on May 9, 2019, 7:40 p.m.