Generates value measures on the population of interest. The values can be the genotypic values (sum of the a values at each qtl) or the phenoypic values (genotypic values + error)
1 2 | phenotype.population(genome, haploid.genos, V_E, V_e,
just.geno.values = FALSE, n.env, n.rep, run.anova = FALSE)
|
genome |
The hypred genome. |
haploid.genos |
A 2n x m matrix of haploid alleles at m loci for n individuals. |
V_E |
The variance of the distribution from which to draw environmental effects. |
V_e |
The variance of the distribution from which to draw residual effects. |
just.geno.values |
Logical whether to just return the genotypic values. |
n.rep |
The number of replicates of each individual in each environment. |
run.anova |
Logical whether to run an anova of the simulated phenotypes. This is useful to verify that the target heritability is being achieved. |
n.evn |
The number of environments to "phenotype" the population. |
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