measure.LD: Calculate linkage disequilibrium

Description Usage Arguments

Description

Measures linkage disequilibrium as the correlation between QTL and markers.

Usage

1
measure.LD(genome, genos, Morgan.window = NULL)

Arguments

genome

The list of hypred genomes.

genos

The n x m matrix of genotypes for n entries across m loci, including QTL.

Morgan.windwo

The distance in each direction of a QTL to the markers used to calculate LD. If NULL, all markers in the genome are used to calculate LD with each QTL.


UMN-BarleyOatSilphium/GSSimTPUpdate documentation built on May 9, 2019, 7:40 p.m.