measure.LD: Calculate linkage disequilibrium
In UMN-BarleyOatSilphium/GSSimTPUpdate: Code and data to accompany the publication [TITLE]

Measures linkage disequilibrium as the correlation between QTL and markers.

1	measure.LD(genome, genos, Morgan.window = NULL)

`genome`	The list of hypred genomes.
`genos`	The n x m matrix of genotypes for n entries across m loci, including QTL.
`Morgan.windwo`	The distance in each direction of a QTL to the markers used to calculate LD. If `NULL`, all markers in the genome are used to calculate LD with each QTL.

UMN-BarleyOatSilphium/GSSimTPUpdate documentation built on May 9, 2019, 7:40 p.m.

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