measure.LD: Calculate linkage disequilibrium
In UMN-BarleyOatSilphium/GSSimTPUpdate: Code and data to accompany the publication [TITLE]
Description
Measures linkage disequilibrium as the correlation between QTL and markers.
Usage
1
measure.LD(genome, genos, Morgan.window = NULL)
Arguments
genome
The list of hypred genomes.
genos
The n x m matrix of genotypes for n entries across m loci,
including QTL.
Morgan.windwo
The distance in each direction of a QTL to the markers
used to calculate LD. If NULL, all markers in the genome are used
to calculate LD with each QTL.
UMN-BarleyOatSilphium/GSSimTPUpdate documentation built on May 9, 2019, 7:40 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Measures linkage disequilibrium as the correlation between QTL and markers.
Usage
1 | measure.LD(genome, genos, Morgan.window = NULL)
|
Arguments
genome |
The list of hypred genomes. |
genos |
The n x m matrix of genotypes for n entries across m loci, including QTL. |
Morgan.windwo |
The distance in each direction of a QTL to the markers
used to calculate LD. If |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.