Files in UMN-BarleyOatSilphium/GSSimTPUpdate
Code and data to accompany the publication [TITLE]
.Rbuildignore
.gitignore
DESCRIPTION
GSSimTPUpdate.Rproj
NAMESPACE
R/CAP_data.R
R/PEVmean_CDmean.R
R/advance_family.R
R/advance_population.R
R/convenience_functions.R
R/genotype_loci.R
R/genotypic_value.R
R/make_crossing_block.R
R/make_family.R
R/make_genome.R
R/make_population.R
R/make_predictions.R
R/measure_LD.R
R/measure_af.R
R/measure_expected_het.R
R/optimize_subset_or_whole.R
R/parse_results.R
R/phenotype_population.R
R/plotting_data.R
R/recombine.R
R/select_haploids.R
R/select_population.R
R/select_values.R
R/sim_summarize.R
R/trait_architecture.R
README.Rmd
README.md
TODO.md
data/CAP.haploids.rda
data/CAP.hmp.rda
data/CAP.lines.rda
data/CAP.markers.rda
data/plotting_data.rda
inst/scripts/CAP_data_preparation.R
inst/scripts/plot_results_use.Rmd
inst/scripts/run_experiment_use.R
inst/scripts/run_simulations_use.job
man/CAP.haploids.Rd
man/CAP.hmp.Rd
man/CAP.lines.Rd
man/CAP.markers.Rd
man/PEVmean.Rd
man/advance.family.Rd
man/advance.population.Rd
man/design.M.Rd
man/find.pos.Rd
man/genotype.loci.Rd
man/genotypic.value.Rd
man/invert.mat.Rd
man/is.polymorphic.Rd
man/make.contrast.Rd
man/make.crossing.block.Rd
man/make.family.Rd
man/make.genome.Rd
man/make.population.Rd
man/make.predictions.Rd
man/measure.LD.Rd
man/measure.af.Rd
man/measure.expected.het.Rd
man/nv_df.Rd
man/optimize.subset.Rd
man/parse.results.Rd
man/phenotype.population.Rd
man/plotting_data.Rd
man/qtl.eff.Rd
man/recombine.Rd
man/round.limit.Rd
man/select.haploids.Rd
man/select.population.Rd
man/select.values.Rd
man/sim.summarize.Rd
man/trait.architecture.Rd
vignettes/t3_data_access.Rmd
