make.population: Make a population

In UMN-BarleyOatSilphium/GSSimTPUpdate: Code and data to accompany the publication [TITLE]

Description

Takes haploid genome information and a crossing block and produce a list of families. The function also requires the genome, the size of the families and the mutation rates.

Usage

make.population(genome, parental.haploids, crossing.block, N, cycle.number,
  generations, pop.type = "random", mutate = TRUE, mutation.rate.snp,
  mutation.rate.qtl)

Arguments

genome	The hypred genome.
parental.haploids	The complete 2n x m matrix of parent haploid genotype information.
N	The number of F_1 individuals to generate.
cycle.number	The integer number of the breeding cycle.
generations	The number of selfing generations of single-seed descent. For instance generations = 5 would results in an F_6 population. For each generation, each of the F_1 individuals results in a single new individual that has undergone an additional generation of inbreeding
pop.type	The type of population to generate. Can be "inbred" or "random" (default).
mutate	A logical as to generate random mutations when recombining.
mutation.rate.snp	The per-base mutation rate of the SNPs.
mutation.rate.qtl	The per-base mutation rate of the QTL.

UMN-BarleyOatSilphium/GSSimTPUpdate documentation built on May 9, 2019, 7:40 p.m.