plot_lucid: Plot Sankey diagram for integrative clustering

In USCbiostats/LUCid: Latent Unknown Clustering with Integrated Data

Description

plot_lucid generates a Sankey diagram for the results of integrative clustering based on an IntClust object.

Usage

plot_lucid(x, switch = FALSE, colorScale = default)

Arguments

x	An IntClust class object
switch	An indicator to do label switching with a descending order in gamma or not, the default is FALSE
colorScale	D3 color scheme for the Sankey diagram

Author(s)

Cheng Peng, Zhao Yang, David V. Conti

References

Cheng Peng, Jun Wang, Isaac Asante, Stan Louie, Ran Jin, Lida Chatzi, Graham Casey, Duncan C Thomas, David V Conti, A Latent Unknown Clustering Integrating Multi-Omics Data (LUCID) with Phenotypic Traits, Bioinformatics, , btz667, https://doi.org/10.1093/bioinformatics/btz667.

Examples

# Run the model with covariates in the G->X path
IntClusCoFit1 <- est_lucid(G=G1,CoG=CoG,Z=Z1,Y=Y1,K=2,family="binary",Pred=TRUE)

# Visualize the results of integrative clustering
plot_lucid(IntClusCoFit1)

USCbiostats/LUCid documentation built on Feb. 22, 2020, 8:57 p.m.