Description Usage Arguments Value Author(s) References Examples
View source: R/summary_lucid.R
summary_lucid
generates a summary for the results of integrative clustering based on an IntClust
object.
1 | summary_lucid(x, switch = FALSE, order = NULL)
|
x |
An |
switch |
An indicator to do label switching or not, the default is FALSE |
order |
A customized order for label switching, a vector with a length of K; the default is NULL, which is a descending order in gamma |
summary_lucid
returns a list containing important outputs from an IntClust
object.
Beta |
Estimates of genetic effects, matrix |
Mu |
Estimates of cluster-specific biomarker means, matrix |
Gamma |
Estimates of cluster-specific disease risk, vector |
select_G |
A logical vector indicates non-zero genetic features |
select_Z |
A logical vector indicates non-zero bio-features |
No0G |
A total # of non-zero genetic features |
No0Z |
A total # of non-zero bio-features |
BIC |
Model BIC |
Cheng Peng, Zhao Yang, David V. Conti
Cheng Peng, Jun Wang, Isaac Asante, Stan Louie, Ran Jin, Lida Chatzi, Graham Casey, Duncan C Thomas, David V Conti, A Latent Unknown Clustering Integrating Multi-Omics Data (LUCID) with Phenotypic Traits, Bioinformatics, , btz667, https://doi.org/10.1093/bioinformatics/btz667.
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