predict_metab.metab_Kmodel: Override generic predict_metab for metab_Kmodel, which can't...

In USGS-R/streamMetabolizer: Models for Estimating Aquatic Photosynthesis and Respiration

Override generic predict_metab for metab_Kmodel, which can't predict metab

Description

metab_Kmodel predicts K (only) at daily timesteps and usually knows nothing about GPP or ER. So it's not possible to predict metabolism from this model. Try get_params() to retrieve the predicted values of K600.daily.

Usage

## S3 method for class 'metab_Kmodel'
predict_metab(
  metab_model,
  date_start = NA,
  date_end = NA,
  day_start = NA,
  day_end = NA,
  ...,
  attach.units = deprecated(),
  use_saved = TRUE
)

Arguments

metab_model	A metabolism model, implementing the metab_model_interface, to use in predicting metabolism
date_start	Date or a class convertible with as.Date. The first date (inclusive) for which to report metabolism predictions. If NA, no filtering is done.
date_end	Date or a class convertible with as.Date. The last date (inclusive) for which to report metabolism predictions. If NA, no filtering is done.
day_start	start time (inclusive) of a day's data in number of hours from the midnight that begins the date. For example, day_start=-1.5 indicates that data describing 2006-06-26 begin at 2006-06-25 22:30, or at the first observation time that occurs after that time if day_start doesn't fall exactly on an observation time. For daily metabolism predictions, day_end - day_start should probably equal 24 so that each day's estimate is representative of a 24-hour period.
day_end	end time (exclusive) of a day's data in number of hours from the midnight that begins the date. For example, day_end=30 indicates that data describing 2006-06-26 end at the last observation time that occurs before 2006-06-27 06:00. For daily metabolism predictions, day_end - day_start should probably equal 24 so that each day's estimate is representative of a 24-hour period.
...	Other arguments passed to class-specific implementations of predict_metab
attach.units	(deprecated, effectively FALSE in future) logical. Should units be attached to the output?
use_saved	logical. Is it OK to use predictions that were saved with the model?

USGS-R/streamMetabolizer documentation built on Aug. 15, 2023, 7:50 a.m.