runstan_bayes: Run Stan on a formatted data ply

In USGS-R/streamMetabolizer: Models for Estimating Aquatic Photosynthesis and Respiration

Run Stan on a formatted data ply

Description

Run Stan on a formatted data ply

Usage

runstan_bayes(
  data_list,
  model_path,
  model_name,
  params_out,
  split_dates,
  keep_mcmc = FALSE,
  n_chains = 4,
  n_cores = 4,
  burnin_steps = 1000,
  saved_steps = 1000,
  thin_steps = 1,
  verbose = FALSE,
  ...
)

Arguments

data_list	a formatted list of inputs to the Stan model
model_path	the Stan model file to use, as a full file path
model_name	the coded model name, as from mm_name, giving the model structure
params_out	a character vector of parameters whose values in the MCMC runs should be recorded and summarized
keep_mcmc	logical. If TRUE, the Stan output object will be saved. Be careful; these can be big, and a run with many models might overwhelm R's memory.
n_chains	the number of chains to run
n_cores	the number of cores to apply to this run
burnin_steps	the number of steps per chain to run and ignore before starting to collect MCMC 'data'
saved_steps	the number of MCMC steps per chain to save
thin_steps	the number of steps to move before saving another step. 1 means save all steps.
verbose	logical. give status messages?
...	ignored arguments

USGS-R/streamMetabolizer documentation built on Aug. 15, 2023, 7:50 a.m.