Files in VCCRI/Ularcirc
Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)
.gitignore
DESCRIPTION
InputFilesExample/SRR444655.Chimeric.out.junction.gz
InputFilesExample/SRR444655.ReadsPerGene.out.tab.gz
InputFilesExample/SRR444655.SJ.out.tab.gz
InputFilesExample/SRR444655.ce.gz
InputFilesExample/SRR444655.ciri.gz
LICENSE
NAMESPACE
NEWS
R/Ularcirc.R
R/Ularcirc_plots.R
R/Ularcirc_standalone.R
R/file_io.R
inst/CITATION
inst/extdata/SRR444655_subset.Chimeric.out.junction.gz
inst/extdata/TwoSzabo.RData
inst/extdata/extdata.txt
inst/extdata/extdata_backup.txt
inst/shiny-app/circRNA/Global.R
inst/shiny-app/circRNA/Server.R
inst/shiny-app/circRNA/UI.R
man/BSJ_Fastq_Generate.Rd
man/BSJ_details.Rd
man/BSJ_to_circRNA_sequence.Rd
man/Compatible_Annotation_DBs.Rd
man/FilterChimericJuncs.Rd
man/FilterChimeric_Ularcirc.Rd
man/Junction_Sequence_from_Genome.Rd
man/RAD_score.Rd
man/SelectUniqueJunctions.Rd
man/Ularcirc.Rd
man/chimericFilters.Rd
man/chimericStats.Rd
man/loadSTAR_chimeric.Rd
man/plot_AllJunctions.Rd
man/sequence_from_exon_coords.Rd
readme.md
vignettes/AnnotatingTwoSzabo.PNG
vignettes/BackspliceJunctionDetails.PNG
vignettes/BackspliceJunctionORF.PNG
vignettes/BackspliceJunction_miRNA.PNG
vignettes/DisplayFilterOptions.PNG
vignettes/HG38_Availale_Databases.PNG
vignettes/IntegrativeGenomicVisualisation_Slc8a1_HG38.PNG
vignettes/ListedSampleIDs.PNG
vignettes/MainPanelTabs.PNG
vignettes/SLC8a1_TwoSzabo.PNG
vignettes/Ularcirc.html
vignettes/Ularcirc.rmd
vignettes/Ularcirc.tex
vignettes/Ularcirc_genomic_filters.PNG
