chimericFilters: chimericFilters

In VCCRI/Ularcirc: Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)

chimericFilters

Description

A wrapper function that prepares a list of filters that can be passed

Usage

chimericFilters(
  BSjuncName = NULL,
  sortDir = "Descending",
  indexNumber = 1,
  displayNumber = 10,
  displayRADscore = FALSE,
  RADcountThreshold = 10,
  applyFSJfilter = FALSE
)

Arguments

BSjuncName	: A character string that represents a backsplice junction ID. Set when needing to extract a specific junction. Default NULL.
sortDir	: Specifies how data is sorted, either "Descending" (default) or "Ascending".
indexNumber	: Filter data according to this file index
displayNumber	: Number of records to display in an shiny app
displayRADscore	: Boolean. If TRUE then will apply/calculate RAD score
RADcountThreshold	: Integer. The minimum count threshold required to calculate RAD score. i.e. A default RAD score of -1 will be applied to any BSJ with a count less than this score
applyFSJfilter	: Boolean of whether to apply FSJ filter

VCCRI/Ularcirc documentation built on April 8, 2022, 5:17 p.m.