chimericFilters: chimericFilters

Description Usage Arguments

View source: R/file_io.R

Description

This function sets the basic filters that are

Usage

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chimericFilters(
  BSjuncName = NULL,
  sortDir = "Descending",
  indexNumber = 1,
  displayNumber = 10,
  displayRADscore = FALSE,
  RADcountThreshold = 10,
  applyFSJfilter = FALSE
)

Arguments

BSjuncName

: A character string that represents a backsplice junction ID. Set when needing to extract a specific junction. Default NULL.

sortDir

: Specifies how data is sorted, either "Descending" (default) or "Ascending".

indexNumber

: Filter data according to this file index

displayNumber

: Number of records to display in an shiny app

displayRADscore

: Boolean. If TRUE then will apply/calculate RAD score

RADcountThreshold

: Integer. The minimum count threshold required to calculate RAD score. i.e. A default RAD score of -1 will be applied to any BSJ with a count less than this score

applyFSJfilter

: Boolean of whether to apply FSJ filter


VCCRI/Ularcirc documentation built on July 3, 2020, 9:57 a.m.