chimericStats: chimericStats
In VCCRI/Ularcirc: Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)
chimericStats R Documentation
chimericStats
Description
Simple function that returns a list of basic stats obtained from a STAR
chimeric file
Usage
chimericStats(chimericDT)
Arguments
chimericDT
: Data table of chimeric junctions as provided by
STAR aligner
See Also
FilterChimericJuncs
Examples
extdata_path <- system.file("extdata",package = "Ularcirc")
chimeric.file <- paste0(extdata_path,"/SRR444655_subset.Chimeric.out.junction.gz")
chimericDT <- Ularcirc::loadSTAR_chimeric(chimeric.file,returnColIdx = 1:14)
Ularcirc::chimericStats(chimericDT$data_set)
chimericDT$filtered <- Ularcirc::FilterChimericJuncs(chimericDT$data_set, canonicalJuncs = TRUE)
Ularcirc::chimericStats(chimericDT$filtered)
VCCRI/Ularcirc documentation built on April 8, 2022, 5:17 p.m.
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| chimericStats | R Documentation |
chimericStats
Description
Simple function that returns a list of basic stats obtained from a STAR chimeric file
Usage
chimericStats(chimericDT)
Arguments
chimericDT |
: Data table of chimeric junctions as provided by STAR aligner |
See Also
FilterChimericJuncs
Examples
extdata_path <- system.file("extdata",package = "Ularcirc")
chimeric.file <- paste0(extdata_path,"/SRR444655_subset.Chimeric.out.junction.gz")
chimericDT <- Ularcirc::loadSTAR_chimeric(chimeric.file,returnColIdx = 1:14)
Ularcirc::chimericStats(chimericDT$data_set)
chimericDT$filtered <- Ularcirc::FilterChimericJuncs(chimericDT$data_set, canonicalJuncs = TRUE)
Ularcirc::chimericStats(chimericDT$filtered)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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