SelectUniqueJunctions: SelectUniqueJunctions

Description Usage Arguments Details

View source: R/file_io.R

Description

Builds a summary table from chimeric data obtained from the STAR aligner. Assembles table with the requested number of top entries. Populates with RAD score and FSJ score.

Usage

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SelectUniqueJunctions(
  BSJ_junctions,
  filterlist = chimericFilters(),
  unstranded = FALSE,
  FSJ_Junctions = NULL,
  shinyapp = FALSE
)

Arguments

BSJ_junctions

: Junction to display

filterlist

: filterlist

unstranded

: If TRUE will match reads from both strands.

FSJ_Junctions

: Junction to display.

shinyapp

: Boolean. If true used to setup control status bars in shiny app.

Details

This is the workhorse for collated BSJ junctions from the input data. It will return selected rows of data (annotated) that will enable enhanced browsing of raw data on the fly.

Filter options: Junction abundance. Sort


VCCRI/Ularcirc documentation built on July 3, 2020, 9:57 a.m.