SelectUniqueJunctions: SelectUniqueJunctions

In VCCRI/Ularcirc: Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)

SelectUniqueJunctions

Description

Builds a summary table from chimeric data obtained from the STAR aligner. Assembles table with the requested number of top entries. Populates with RAD score and FSJ score.

Usage

SelectUniqueJunctions(
  BSJ_junctions,
  filterlist = chimericFilters(),
  unstranded = FALSE,
  FSJ_Junctions = NULL,
  shinyapp = FALSE
)

Arguments

BSJ_junctions	: Junction to display
filterlist	: filterlist
unstranded	: If TRUE will match reads from both strands.
FSJ_Junctions	: Junction to display.
shinyapp	: Boolean. If true used to setup control status bars in shiny app.

Details

This is the workhorse for collated BSJ junctions from the input data. It will return selected rows of data (annotated) that will enable enhanced browsing of raw data on the fly.

Filter options: Junction abundance. Sort

VCCRI/Ularcirc documentation built on April 8, 2022, 5:17 p.m.