BSJ_details: BSJ_details This function returns details of a BSJ string and...

In VCCRI/Ularcirc: Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)

BSJ_details This function returns details of a BSJ string and returns a list of coordinates. Can accept two different formats, Ularcirc or generic.

Description

BSJ_details This function returns details of a BSJ string and returns a list of coordinates. Can accept two different formats, Ularcirc or generic.

Usage

BSJ_details(BSJ)

Arguments

BSJ	: backsplice junction as a string. See details below for example formats

Examples

bsj <-  'chr14_99465814_chr14_99458278'   # Historic Ularcirc format

bsj <- c("chr14_99465814_chr14_99458278","chr22_20933778_chr22_20934245",
         "chr12_120155720_chr12_120154969", "chr4_143543508_chr4_143543973",
         "chr10_7285955_chr10_7276891")

BSJ_details(bsj)

bsj <- 'chr10:100923974-100926020:+'     # generic format
BSJ_details(bsj)

VCCRI/Ularcirc documentation built on April 8, 2022, 5:17 p.m.