VEuPathDB/veupathUtils
General Helper Functions for VEuPathDB Projects

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VEuPathDB/veupathUtils: General Helper Functions for VEuPathDB Projects
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API

API for VEuPathDB/veupathUtils
General Helper Functions for VEuPathDB Projects

Global functions
Bin Man page
Bin-class Man page
Collection Man page
Collection,character,character,character,character-method Man page
Collection,character,character,missing,missing-method Man page
Collection,character,data.frame,character,character-method Man page
Collection,character,data.frame,missing,missing-method Man page
Collection,missing,missing,missing,missing-method Man page
Collection-class Man page
CollectionWithMetadata Man page
CollectionWithMetadata-class Man page
Collections Man page
Collections,Collection,missing-method Man page
Collections,character,missing-method Man page
Collections,data.frame,data.frame-method Man page
Collections,data.frame,missing-method Man page
Collections,list,data.frame-method Man page
Collections,list,missing-method Man page
Collections,missing,missing-method Man page
Collections-class Man page
Comparator Man page
Comparator-class Man page
ComputeResult Man page
ComputeResult-class Man page
CorrelationResult Man page
CorrelationResult-class Man page
CountDataCollection Man page
CountDataCollection-class Man page
Megastudy Man page
Megastudy-class Man page
Range Man page
Range-class Man page
S4SimpleListToJSON Source code
SampleMetadata Man page
SampleMetadata-class Man page
Statistic Man page
Statistic-class Man page
StudySpecificVocabulariesByVariable Man page
StudySpecificVocabulariesByVariable-class Man page
VariableSpec Man page
VariableSpec-class Man page
as.numeric,Bin-method Man page
as.numeric,BinList-method Man page
breaks Source code
buildCorrelationComputeResult Source code
check_bin_range Source code
check_bin_range_list Source code
check_collection Source code
check_collection_with_metadata Source code
check_collections Source code
check_comparator Source code
check_compute_result Source code
check_correlation_result Source code
check_count_data_collection Source code
check_data_shape Source code
check_data_type Source code
check_megastudy Source code
check_multiple_study_vocabularies_on_same_entity Source code
check_plot_reference Source code
check_range Source code
check_sample_metadata Source code
check_statistic Source code
check_study_vocabulary Source code
check_variable_class Source code
check_variable_metadata Source code
cleanComparatorVariable Source code
clean_names Source code
collectionBuilder Source code
collectionsBuilder Source code
correlation Man page
correlation,Collection,Collection-method Man page
correlation,CollectionWithMetadata,missingOrNULL-method Man page
correlation,data.table,data.table-method Man page
correlation,data.table,missingOrNULL-method Man page
cut_interval Man page Source code
cut_number Man page Source code
cut_width Man page Source code
data_frame Man page Source code
differentialExpression Man page
findAllColNames Man page
findAncestorIdColumns Source code
findColNamesByPredicate Man page
findColNamesFromPlotRef Man page
findCollectionDataColumns Source code
findCollectionId Source code
findCollectionIds Source code
findCollectionVariableMetadata Man page
findDataShapesFromPlotRef Man page
findDataTypesFromPlotRef Man page
findEntityIdColumnNameForVariableSpec Source code
findIndexFromPlotRef Man page
findNumericCols Man page Source code
findRecordIdColumn Source code
findStudyDependentVocabularyVariableMetadata Man page
findStudyVocabularyByVariableSpec Source code
findVariableMetadataFromPlotRef Man page
findVariableSpecFromPlotRef Man page
findVariableSpecsFromStudyVocabulary Source code
findVariablesNeedingWeightingVariableMetadata Man page
findWeightingVariablesMetadata Man page
find_origin Source code
getAggStr Man page Source code
getColName Man page
getCollectionData Man page
getCollectionData,Collection-method Man page
getCollectionName Source code
getCollectionNames Man page
getCollectionNames,Collections-method Man page
getCollectionVariableNames Man page
getCollectionVariableNames,Collection-method Man page
getCollectionsList Source code
getDTWithImputedZeroes Man page
getDataFromSource Source code
getDataMetadataType Source code
getDataTable Man page
getDiscretizedBins Man page Source code
getGroupLabels Man page
getIdColumns Man page
getIdColumns,ANY-method Man page
getMetadataVariableNames Man page
getMetadataVariableNames,CollectionWithMetadata-method Man page
getMetadataVariableSummary Man page
getMetadataVariableSummary,CollectionWithMetadata-method Man page
getSampleMetadata Man page
getSampleMetadata,CollectionWithMetadata-method Man page
getSampleMetadata,SampleMetadata-method Man page
getSampleMetadataIdColumns Man page
getSampleMetadataIdColumns,CollectionWithMetadata-method Man page
getSampleMetadataIdColumns,SampleMetadata-method Man page
getStudyIdColumnName Man page
getVariableColumnNames Source code
getVariableSpec Man page
getVariableSpecColumnName Man page
is.POSIXct Man page Source code
is.error Man page Source code
isNAorNonNegative Source code
isNAorZero Source code
isOneToManyWithAncestor Man page
isOneToManyWithAncestor,Collection-method Man page
logWithTime Man page Source code
matchArg Man page Source code
megastudyDataReal Man page
merge Man page
naToZero Man page Source code
naToZero.data.frame Source code
naToZero.data.table Source code
naToZero.default Source code
naToZero.list Source code
name Man page
name,Collection-method Man page
name<- Man page
name<-,Collection,character-method Man page
name<-,Collection-method Man page
new_data_frame Source code
nonZeroRound Man page Source code
pca Man page
predicateFactory Man page
predicateFactory,character,numeric-method Man page
pruneFeatures Man page
pruneFeatures,Collection-method Man page
removeAttr Source code
removeIncompleteRecords Man page
removeIncompleteRecords,CollectionWithMetadata-method Man page
selfCorrelation Man page
selfCorrelation,Collection-method Man page
selfCorrelation,SampleMetadata-method Man page
selfCorrelation,data.table-method Man page
setAttrFromList Man page Source code
setNaToZero Man page Source code
setroworder Man page Source code
shiftToNonNeg Man page Source code
signifDigitEpsilon Source code
strSplit Man page Source code
stripEntityIdFromColumnHeader Man page Source code
toJSON Man page
toStringOrNull Man page Source code
toStringOrPoint Source code
trim Man page
updateAttrById Source code
validateIdColumns Source code
validateNumericCols Man page Source code
validateNumericCols.data.table Source code
validateNumericCols.default Source code
validateNumericCols.list Source code
veupathUtils Man page
veupathUtils-package Man page
whichValuesInBin Man page
whichValuesInBinList Man page
writeData Man page
writeMeta Man page
writeStatistics Man page
VEuPathDB/veupathUtils documentation built on Feb. 8, 2025, 12:29 p.m.

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