CB_clsi_breakpoints: Determine CLSI sensitivity

In Vincent-AC/wellexplainer: Helper functions for MIC and Checkerboard experiments

Description

This function given a data.frame with MICs will add a column to this table giving the corresponding CLSI sensitivity (Sensitive, Intermediate or Resistant)

Usage

CB_clsi_breakpoints(CB.table, species = "Acinetobacter", MIC.A.column = 3,
  MIC.B.column = 4, FICI.conc.A.column = 6, FICI.conc.B.column = 7,
  ATB.A.column = 1, ATB.B.column = 2)

Arguments

CB.table	data.frame having MIC.A and MIC.B in one column respectively.
species	Species of the studied bacteria, for the moment only "Acinetobacter" is available. Defaults to "Acinetobacter"
MIC.A.column	ID of the column containing the MIC values in CB.table. Defaults to 2
MIC.B.column	ID of the column containing the MIC values in CB.table. Defaults to 2
ATB.A.column	ID of the column containing the ATB names in CB.table. Defaults to 1
ATB.B.column	ID of the column containing the ATB names in CB.table. Defaults to 1

Examples

CB_clsi_breakpoints()

Vincent-AC/wellexplainer documentation built on May 28, 2019, 3:21 p.m.