extract_CB_OD_data: Extract data from spectrophotometer output

In Vincent-AC/wellexplainer: Helper functions for MIC and Checkerboard experiments

Description

This function allows you to extract optical density (OD) data from raw output given by the TECAN OD reader, and store it to a list of data.frame() (one data.frame per excel sheet)

Usage

extract_CB_OD_data(raw_data_filename, max.conc.A, max.conc.B, startRow = 24,
  endRow = 32)

Arguments

raw_data_filename	path to the excel file
max.conc.A	vector giving the maximum concentration of antibiotic A.The first element the vector corresponds to the max concentration of antibiotic A for the first sheet.
max.conc.B	vector giving the maximum concentration of antibiotic B.The first element the vector corresponds to the max concentration of antibiotic B for the first sheet.
startRow	Excel row number where the OD readings start
endRow	Excel row number where the OD readings stop

Examples

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Vincent-AC/wellexplainer documentation built on May 28, 2019, 3:21 p.m.