extract_MIC_OD_data: Extract data from spectrophotometer output

In Vincent-AC/wellexplainer: Helper functions for MIC and Checkerboard experiments

Description

This function allows you to extract optical density (OD) data from raw output given by the TECAN OD reader, and store it to a list of data.frame() (one data.frame per excel sheet)

Usage

extract_MIC_OD_data(raw_data_filename, max.conc, startRow = 24, endRow = 32)

Arguments

raw_data_filename	path to the excel file
max.conc	list of vector giving the maximum concentration of antibiotic used for each row of each plate. The first element of the list corresponds to the first excel sheet. The first element of each vector corresponds to the first line of the plate
startRow	Excel row number where the OD readings start
endRow	Excel row number where the OD readings stop

Examples

extract_MIC_OD_data("../../CahierDeLabo/MyELN/JPIAMR-Acineto/MIC/
MIC_26-09-17/MIC-26-09-17.xlsx",
list(c(rep(512,4),rep(128,4)),512,512,512,512,512))

Vincent-AC/wellexplainer documentation built on May 28, 2019, 3:21 p.m.