calculate_CB_OD_growth: Convert OD into growth percentage

In Vincent-AC/wellexplainer: Helper functions for MIC and Checkerboard experiments

Description

Calculate growth percentage in each well in order to determine the MIC of A and B for each row

Usage

calculate_CB_OD_growth(processed_OD_data_list, negative_control_col = 12,
  positive_control_col = 11, highest_conc_col.A = 1,
  lowest_conc_col.A = 10, highest_conc_row.B = 8, lowest_conc_row.B = 1,
  number_of_lines = 8)

Arguments

processed_OD_data_list	List of data.frame. The first column of each data.frame being the denomination of what is in the line and the following columns being OD values read by the plate reader. The output of extract_MIC_OD_data is already in the correct format.
negative_control_col	Number of the column that contains the negative control. Defaults to 12
positive_control_col	Number of the column that contains the positive control. Defaults to 11
lowest_conc_col.A	Number of the column that contains the lowest concentration of ATB.A Defaults to 10
lowest_conc_row.B	Number of the row that contains the lowest concentration of ATB.B Defaults to 1
number_of_lines	Number of lines used by plate. Defaults to 8
higest_conc_col.A	Number of the column that contains the highest concentration of ATB.A. Defaults to 1
higest_conc_row.B	Number of the row that contains the highest concentration of ATB.B. Defaults to 8

Examples

calculate_CB_OD_growth()

Vincent-AC/wellexplainer documentation built on May 28, 2019, 3:21 p.m.