clsi_breakpoints: Determine CLSI sensitivity

In Vincent-AC/wellexplainer: Helper functions for MIC and Checkerboard experiments

Description

This function given a data.frame with MIC will add a column to this table giving the corresponding CLSI sensitivity (Sensitive, Intermediate or Resistant)

Usage

clsi_breakpoints(MIC.table, separator = " - ", species = "Acinetobacter",
  MIC.column = 2, ATB.column = 1)

Arguments

MIC.table	data.frame having MIC in one column. If multiple MIC are given in one row they must be separated by separator
separator	When multiple MIC are given in one cell they must be separated by separator. Defaults to " - "
species	Species of the studied bacteria, for the moment only "Acinetobacter" is available. Defaults to "Acinetobacter"
MIC.column	ID of the column containing the MIC values in MIC.table. Defaults to 2
ATB.column	ID of the column containing the ATB names in MIC.table. Defaults to 1

Examples

clsi_breakpoints()

Vincent-AC/wellexplainer documentation built on May 28, 2019, 3:21 p.m.