VingronLab/APL: Association Plots

APL is a package developed for computation of Association Plots (AP), a method for visualization and analysis of single cell transcriptomics data. The main focus of APL is the identification of genes characteristic for individual clusters of cells from input data. The package performs correspondence analysis (CA) and allows to identify cluster-specific genes using Association Plots. Additionally, APL computes the cluster-specificity scores for all genes which allows to rank the genes by their specificity for a selected cell cluster of interest.

Getting started

Package details

Bioconductor views DimensionReduction GeneExpression RNASeq Sequencing SingleCell StatisticalMethod
Maintainer
LicenseGPL (>= 3)
Version1.1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("VingronLab/APL")
VingronLab/APL documentation built on Oct. 16, 2022, 11:41 a.m.