clip_residuals: Perform clipping of residuals
In VingronLab/APL: Association Plots
clip_residuals R Documentation
Perform clipping of residuals
Description
Clips Pearson or negative-binomial residuals above or below a determined
value. For Pearson (Poisson) residuals it is set by default for 1, for NB at
sqrt(n).
Usage
clip_residuals(S, cutoff = sqrt(ncol(S)))
Arguments
S
Matrix of residuals.
cutoff
Value above/below which clipping should happen.
Value
Matrix of clipped residuals.
References
Lause, J., Berens, P. & Kobak, D. Analytic Pearson residuals for
normalization of single-cell RNA-seq UMI data. Genome Biol 22, 258 (2021).
https://doi.org/10.1186/s13059-021-02451-7
VingronLab/APL documentation built on Nov. 9, 2024, 5:33 p.m.
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| clip_residuals | R Documentation |
Perform clipping of residuals
Description
Clips Pearson or negative-binomial residuals above or below a determined value. For Pearson (Poisson) residuals it is set by default for 1, for NB at sqrt(n).
Usage
clip_residuals(S, cutoff = sqrt(ncol(S)))
Arguments
S |
Matrix of residuals. |
cutoff |
Value above/below which clipping should happen. |
Value
Matrix of clipped residuals.
References
Lause, J., Berens, P. & Kobak, D. Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data. Genome Biol 22, 258 (2021). https://doi.org/10.1186/s13059-021-02451-7
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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