cacomp_slot: Access slots in a cacomp object
In VingronLab/APL: Association Plots

cacomp_slot

R Documentation

Access slots in a cacomp object

Description

Access slots in a cacomp object

Usage

cacomp_slot(caobj, slot)

Arguments

`caobj`	a cacomp object
`slot`	slot to return

Value

Chosen slot of the cacomp object

Examples

# Simulate scRNAseq data.
cnts <- data.frame(cell_1 = rpois(10, 5),
                   cell_2 = rpois(10, 10),
                   cell_3 = rpois(10, 20))
rownames(cnts) <- paste0("gene_", 1:10)
cnts <- as.matrix(cnts)

# Run correspondence analysis.
ca <- cacomp(obj = cnts, princ_coords = 3, top = 5)

# access left singular vectors
cacomp_slot(ca, "U")

VingronLab/APL documentation built on Nov. 9, 2024, 5:33 p.m.