apl_ggplot: Plot Association Plot with ggplot
In VingronLab/APL: Association Plots

apl_ggplot

R Documentation

Plot Association Plot with ggplot

Description

Uses ggplot to plot an Association Plot

Usage

apl_ggplot(
  rows,
  rows_group = NULL,
  cols,
  cols_group = NULL,
  rows_scored = NULL,
  rows_color = "#0066FF",
  rows_high_color = "#FF0000",
  cols_color = "#601A4A",
  cols_high_color = "#EE442F",
  score_color = "rainbow",
  row_labs = FALSE,
  col_labs = FALSE,
  show_score = FALSE,
  show_cols = FALSE,
  show_rows = TRUE
)

Arguments

`rows`	Row APL-coordinates
`rows_group`	Row AP-coordinates to highlight
`cols`	Column AP-coordinates
`cols_group`	Column AP-coordinates for the group to be highlighted.
`rows_scored`	Row AP-coordinates of rows above a score cutoff.
`rows_color`	Color for rows
`rows_high_color`	Color for rows to be highlighted.
`cols_color`	Column points color.
`cols_high_color`	Color for column points to be highlighted..
`score_color`	Color scheme for row points with a score.
`row_labs`	Logical. Whether labels for rows indicated by rows_idx should be labeled with text. Default TRUE.
`col_labs`	Logical. Whether labels for columns indicated by cols_idx shouls be labeled with text. Default FALSE.
`show_score`	Logical. Whether the S-alpha score should be shown in the plot.
`show_cols`	Logical. Whether column points should be plotted.
`show_rows`	Logical. Whether row points should be plotted.