random_direction_cutoff: Random direction association plot coordinates

In VingronLab/APL: Association Plots

Random direction association plot coordinates

Description

Calculates matrix of apl coordinates for random directions

Usage

random_direction_cutoff(caobj, dims = caobj@dims, reps = 100)

Arguments

caobj	A "cacomp" object with principal row coordinates and standardized column coordinates calculated.
dims	Integer. Number of CA dimensions to retain. Needs to be the same as in caobj!
reps	Integer. Number of permutations to perform.

Value

List with permuted apl coordinates ("apl_perm") and, a list of saved ca components ("saved_ca") that allow for quick recomputation of the CA results. For random_direction_cutoff this saved_ca is empty.

VingronLab/APL documentation built on Nov. 9, 2024, 5:33 p.m.