MSstatsInputFiles: Class to model files that describe a single MS dataset.
In Vitek-Lab/MSstatsConvert: Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format
MSstatsInputFiles-class R Documentation
Class to model files that describe a single MS dataset.
Description
Class to model files that describe a single MS dataset.
MSstatsDIAUmpireFiles: class for DIAUmpire files.
MSstatsMaxQuantFiles: class for MaxQuant files.
MSstatsOpenMSFiles: class for OpenMS files.
MSstatsOpenSWATHFiles: class for OpenSWATH files.
MSstatsProgenesisFiles: class for Progenesis files.
MSstatsProteomeDiscovererFiles: class for ProteomeDiscoverer files.
MSstatsSkylineFiles: class for Skyline files.
MSstatsSkylineFiles: class for SpectroMine files.
MSstatsSpectronautFiles: class for Spectronaut files.
MSstatsPhilosopherFiles: class for Philosopher files.
MSstatsDIANNFiles: class for DIA-NN files.
MSstatsFragPipeFiles: class for FragPipe files.
MSstatsMetamorpheusFiles: class for Metamorpheus files.
Slots
filesnamed list of files generated by a signal processing tools.
In most cases, this will be a single file named input.
In some cases, multiple files are used, for example MaxQuant outputs
evidence and proteinGroups files.
typecharacter: "MSstats" or "MSstatsTMT".
toolcharacter: name of a signal processing tools that generated the
output. Possible values are: DIAUmpire, MaxQuant, OpenMS, OpenSWATH,
Progenesis, ProteomeDiscoverer, Skyline, SpectroMine, Spectronaut.
versiondescription of a software version of the signal processing tool.
Not implemented yet.
Vitek-Lab/MSstatsConvert documentation built on May 9, 2024, 6:23 a.m.
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| MSstatsInputFiles-class | R Documentation |
Class to model files that describe a single MS dataset.
Description
Class to model files that describe a single MS dataset.
MSstatsDIAUmpireFiles: class for DIAUmpire files.
MSstatsMaxQuantFiles: class for MaxQuant files.
MSstatsOpenMSFiles: class for OpenMS files.
MSstatsOpenSWATHFiles: class for OpenSWATH files.
MSstatsProgenesisFiles: class for Progenesis files.
MSstatsProteomeDiscovererFiles: class for ProteomeDiscoverer files.
MSstatsSkylineFiles: class for Skyline files.
MSstatsSkylineFiles: class for SpectroMine files.
MSstatsSpectronautFiles: class for Spectronaut files.
MSstatsPhilosopherFiles: class for Philosopher files.
MSstatsDIANNFiles: class for DIA-NN files.
MSstatsFragPipeFiles: class for FragPipe files.
MSstatsMetamorpheusFiles: class for Metamorpheus files.
Slots
filesnamed list of files generated by a signal processing tools. In most cases, this will be a single file named
input. In some cases, multiple files are used, for exampleMaxQuantoutputsevidenceandproteinGroupsfiles.typecharacter: "MSstats" or "MSstatsTMT".
toolcharacter: name of a signal processing tools that generated the output. Possible values are: DIAUmpire, MaxQuant, OpenMS, OpenSWATH, Progenesis, ProteomeDiscoverer, Skyline, SpectroMine, Spectronaut.
versiondescription of a software version of the signal processing tool. Not implemented yet.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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