MSstatsLogsSettings: Set how MSstats will log information from data processing

In Vitek-Lab/MSstatsConvert: Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

Set how MSstats will log information from data processing

Description

Set how MSstats will log information from data processing

Usage

MSstatsLogsSettings(
  use_log_file = TRUE,
  append = FALSE,
  verbose = TRUE,
  log_file_path = NULL,
  base = "MSstats_log_",
  pkg_name = "MSstats"
)

Arguments

use_log_file	logical. If TRUE, information about data processing will be saved to a file.
append	logical. If TRUE, information about data processing will be added to an existing log file.
verbose	logical. If TRUE, information about data processing wil be printed to the console.
log_file_path	character. Path to a file to which information about data processing will be saved. If not provided, such a file will be created automatically. If append = TRUE, has to be a valid path to a file.
base	start of the file name.
pkg_name	currently "MSstats", "MSstatsPTM" or "MSstatsTMT". Each package can use its own separate log settings.

Value

TRUE invisibly in case of successful logging setup.

Examples

# No logging and no messages
MSstatsLogsSettings(FALSE, FALSE, FALSE)
# Log, but do not display messages
MSstatsLogsSettings(TRUE, FALSE, FALSE)
# Log to an existing file
file.create("new_log.log")
MSstatsLogsSettings(TRUE, TRUE, log_file_path = "new_log.log")
# Do not log, but display messages
MSstatsLogsSettings(FALSE)

Vitek-Lab/MSstatsConvert documentation built on Dec. 17, 2024, 1:14 a.m.