getDataType: Get type of dataset from an MSstatsInputFiles object.

In Vitek-Lab/MSstatsConvert: Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

Get type of dataset from an MSstatsInputFiles object.

Description

Get type of dataset from an MSstatsInputFiles object.

Usage

getDataType(msstats_object)

## S4 method for signature 'MSstatsInputFiles'
getDataType(msstats_object)

Arguments

msstats_object

object that inherits from MSstatsInputFiles class.

Value

character - label of a data type. Currently, "MSstats" or "MSstatsTMT"

character "MSstats" or "MSstatsTMT".

Examples

evidence_path = system.file("tinytest/raw_data/MaxQuant/mq_ev.csv", 
                            package = "MSstatsConvert")
pg_path = system.file("tinytest/raw_data/MaxQuant/mq_pg.csv", 
                      package = "MSstatsConvert")
evidence = read.csv(evidence_path)
pg = read.csv(pg_path)
imported = MSstatsImport(list(evidence = evidence, protein_groups = pg),
                         "MSstats", "MaxQuant")
class(imported)
getDataType(imported) # "MSstats"

Vitek-Lab/MSstatsConvert documentation built on Dec. 17, 2024, 1:14 a.m.