getInputFile: Get one of files contained in an instance of...

In Vitek-Lab/MSstatsConvert: Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

Get one of files contained in an instance of MSstatsInputFiles class.

Description

Get one of files contained in an instance of MSstatsInputFiles class.

Usage

getInputFile(msstats_object, file_type)

## S4 method for signature 'MSstatsInputFiles'
getInputFile(msstats_object, file_type = "input")

## S4 method for signature 'MSstatsPhilosopherFiles'
getInputFile(msstats_object, file_type = "input")

Arguments

msstats_object	object that inherits from MSstatsPhilosopherFiles class.
file_type	character name of a type file. Usually equal to "input".

Value

data.table

data.table

data.table

Examples

evidence_path = system.file("tinytest/raw_data/MaxQuant/mq_ev.csv", 
                            package = "MSstatsConvert")
pg_path = system.file("tinytest/raw_data/MaxQuant/mq_pg.csv", 
                      package = "MSstatsConvert")
evidence = read.csv(evidence_path)
pg = read.csv(pg_path)
imported = MSstatsImport(list(evidence = evidence, protein_groups = pg),
                         "MSstats", "MaxQuant")
class(imported)
head(getInputFile(imported, "evidence"))

Vitek-Lab/MSstatsConvert documentation built on Dec. 17, 2024, 1:14 a.m.