MSstatsSummarizationOutputTMT: Combine feature-level and protein-level data into single...

In Vitek-Lab/MSstatsTMT: Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling

Combine feature-level and protein-level data into single output

Description

Combine feature-level and protein-level data into single output

Usage

MSstatsSummarizationOutputTMT(
  summarized,
  processed,
  remove_empty_channel,
  remove_norm_channel
)

Arguments

summarized	output of the getSummarizedTMT function
processed	output of the getProcessedTMT function
remove_empty_channel	TRUE(default) removes 'Empty' channels from protein level data.
remove_norm_channel	TRUE(default) removes 'Norm' channels from protein level data.

Value

list that consists of two data.frames with feature-level and protein-level data

Vitek-Lab/MSstatsTMT documentation built on April 30, 2024, 6:05 p.m.