API for Vitek-Lab/MSstatsTMT
Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
| Global functions | |
|---|---|
| .addVarianceInformation | Source code |
| .checkContrastMatrix | Man page Source code |
| .checkGroupComparisonInput | Source code |
| .checkSingleSubject | Source code |
| .checkSummarizationParams | Man page Source code |
| .countRunsWithNorm | Man page Source code |
| .documentFunction | Man page Source code |
| .fitModelTMT | Source code |
| .getNormalizationAbundance | Man page Source code |
| .getPhilosopherInput | Man page Source code |
| .getRunsMedian | Man page Source code |
| .handleSingleContrastTMT | Man page |
| .logSum | Man page Source code |
| .logSummarizationParams | Man page Source code |
| .makeContrast | Source code |
| .makeContrastSingleTMT | Man page |
| .makeFactorColumnsTMT | Man page Source code |
| .medianPolish | Man page Source code |
| .normalizePeptides | Man page Source code |
| .normalizeProteins | Man page Source code |
| .plotProfileTMT | Source code |
| .prepareDataForPlot | Source code |
| .prepareForSummarization | Man page Source code |
| .removeRedundantChannels | Man page Source code |
| .summarizeMSstats | Man page Source code |
| .summarizeSimpleStat | Man page Source code |
| .summarizeTMP | Man page Source code |
| .summarizeTMT | Man page Source code |
| MSstatsComparisonModelSingleTMT | Man page Source code |
| MSstatsFitComparisonModelsTMT | Man page Source code |
| MSstatsGroupComparisonOutputTMT | Man page Source code |
| MSstatsGroupComparisonTMT | Man page Source code |
| MSstatsModerateTTest | Man page Source code |
| MSstatsNormalizeTMT | Man page Source code |
| MSstatsPrepareForGroupComparisonTMT | Man page Source code |
| MSstatsPrepareForSummarizationTMT | Man page Source code |
| MSstatsSummarizationOutputTMT | Man page Source code |
| MSstatsSummarizeTMT | Man page Source code |
| MSstatsTMT | Man page |
| MSstatsTestSingleProteinTMT | Man page Source code |
| MaxQtoMSstatsTMTFormat | Man page Source code |
| OpenMStoMSstatsTMTFormat | Man page Source code |
| PDtoMSstatsTMTFormat | Man page Source code |
| PhilosophertoMSstatsTMTFormat | Man page Source code |
| SpectroMinetoMSstatsTMTFormat | Man page Source code |
| annotation.mine | Man page |
| annotation.mq | Man page |
| annotation.pd | Man page |
| dataProcessPlotsTMT | Man page Source code |
| evidence | Man page |
| getProcessedTMT | Man page Source code |
| getSummarizedTMT | Man page Source code |
| groupComparisonTMT | Man page Source code |
| input.pd | Man page |
| proteinGroups | Man page |
| proteinSummarization | Man page Source code |
| quant.pd.msstats | Man page |
| raw.mine | Man page |
| raw.om | Man page |
| raw.pd | Man page |
| test.pairwise | Man page |
