raw.pd: Example of output from Proteome Discoverer 2.2 for TMT-10plex...
In Vitek-Lab/MSstatsTMT: Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
raw.pd R Documentation
Example of output from Proteome Discoverer 2.2 for TMT-10plex experiments.
Description
Example of Proteome discover PSM sheet.
It is the input for PDtoMSstatsTMTFormat function, with annotation file.
Annotation file should be made by users.
It includes peak intensities for 10 proteins
among 15 MS runs with TMT-10plex.
The variables are as follows:
Usage
raw.pd
Format
A data frame with 2858 rows and 50 variables.
Details
Master.Protein.Accessions
Protein.Accessions
Annotated.Sequence
Charge
Ions.Score
Spectrum.File
Quan.Info
Channels : 126, ..., 131
Examples
head(raw.pd)
Vitek-Lab/MSstatsTMT documentation built on Oct. 19, 2024, 1:14 a.m.
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| raw.pd | R Documentation |
Example of output from Proteome Discoverer 2.2 for TMT-10plex experiments.
Description
Example of Proteome discover PSM sheet. It is the input for PDtoMSstatsTMTFormat function, with annotation file. Annotation file should be made by users. It includes peak intensities for 10 proteins among 15 MS runs with TMT-10plex. The variables are as follows:
Usage
raw.pd
Format
A data frame with 2858 rows and 50 variables.
Details
Master.Protein.Accessions
Protein.Accessions
Annotated.Sequence
Charge
Ions.Score
Spectrum.File
Quan.Info
Channels : 126, ..., 131
Examples
head(raw.pd)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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