dot-calculatePower: Power calculation

In Vitek-Lab/MSstatsTMT: Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling

Power calculation

Description

Power calculation

Usage

.calculatePower(
  desiredFC,
  FDR,
  delta,
  median_sigma_error,
  median_sigma_subject,
  median_sigma_run,
  numSample
)

Arguments

desiredFC	the range of a desired fold change which includes the lower and upper values of the desired fold change.
FDR	a pre-specified false discovery ratio (FDR) to control the overall false positive rate. Default is 0.05
delta	difference between means (?)
median_sigma_error	median of error standard deviation
median_sigma_subject	median standard deviation per subject
numSample	minimal number of biological replicates per condition. TRUE represents you require to calculate the sample size for this category, else you should input the exact number of biological replicates.

Vitek-Lab/MSstatsTMT documentation built on Nov. 18, 2024, 11:30 a.m.