quant.pd.msstats: Example of output from proteinSummarizaiton function

In Vitek-Lab/MSstatsTMT: Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling

Example of output from proteinSummarizaiton function

Description

It is made from input.pd. It is the output of proteinSummarization function. It is a list that consists of two data.frames with feature-level (FeatureLevelData) and protein-level data (ProteinLevelData). ProteinLevelData should include the required columns as below.

Usage

quant.pd.msstats

Format

A data frame with 100 rows and 8 variables.

Details

• Run : MS run ID

• Protein : Protein ID

• Abundance: Protein-level summarized abundance

• Channel : Labeling information (126, ... 131)

• Condition : Condition (ex. Healthy, Cancer, Time0)

• BioReplicate : Unique ID for biological subject.

• TechRepMixture : Unique ID for technical replicate of one TMT mixture.

• Mixture : Unique ID for TMT mixture.

Examples

head(quant.pd.msstats$ProteinLevelData)

Vitek-Lab/MSstatsTMT documentation built on April 30, 2024, 6:05 p.m.