quant.pd.msstats: Example of output from proteinSummarizaiton function
In Vitek-Lab/MSstatsTMT: Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
quant.pd.msstats R Documentation
Example of output from proteinSummarizaiton function
Description
It is made from input.pd.
It is the output of proteinSummarization function.
It is a list that consists of two data.frames with
feature-level (FeatureLevelData) and protein-level data (ProteinLevelData).
ProteinLevelData should include the required columns as below.
Usage
quant.pd.msstats
Format
A data frame with 100 rows and 8 variables.
Details
Run : MS run ID
Protein : Protein ID
Abundance: Protein-level summarized abundance
Channel : Labeling information (126, ... 131)
Condition : Condition (ex. Healthy, Cancer, Time0)
BioReplicate : Unique ID for biological subject.
TechRepMixture : Unique ID for technical replicate of one TMT mixture.
Mixture : Unique ID for TMT mixture.
Examples
head(quant.pd.msstats$ProteinLevelData)
Vitek-Lab/MSstatsTMT documentation built on Nov. 18, 2024, 11:30 a.m.
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| quant.pd.msstats | R Documentation |
Example of output from proteinSummarizaiton function
Description
It is made from input.pd.
It is the output of proteinSummarization function.
It is a list that consists of two data.frames with
feature-level (FeatureLevelData) and protein-level data (ProteinLevelData).
ProteinLevelData should include the required columns as below.
Usage
quant.pd.msstats
Format
A data frame with 100 rows and 8 variables.
Details
Run : MS run ID
Protein : Protein ID
Abundance: Protein-level summarized abundance
Channel : Labeling information (126, ... 131)
Condition : Condition (ex. Healthy, Cancer, Time0)
BioReplicate : Unique ID for biological subject.
TechRepMixture : Unique ID for technical replicate of one TMT mixture.
Mixture : Unique ID for TMT mixture.
Examples
head(quant.pd.msstats$ProteinLevelData)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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