raw.om: Example of MSstatsTMT report from OpenMS for TMT-10plex...
In Vitek-Lab/MSstatsTMT: Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
raw.om R Documentation
Example of MSstatsTMT report from OpenMS for TMT-10plex experiments.
Description
Example of MSstatsTMT PSM sheet from MaxQuant.
It is the input for OpenMStoMSstatsTMTFormat function.
It includes peak intensities for 10 proteins among 27 MS runs from three TMT10 mixtures.
The important variables are as follows:
Usage
raw.om
Format
A data frame with 860 rows and 13 variables.
Details
RetentionTime
ProteinName
PeptideSequence
Charge
Channel
Condition
BioReplicate
Run
Mixture
TechRepMixture
Fraction
Intensity
Reference
Examples
head(raw.om)
Vitek-Lab/MSstatsTMT documentation built on May 25, 2024, 4:12 p.m.
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| raw.om | R Documentation |
Example of MSstatsTMT report from OpenMS for TMT-10plex experiments.
Description
Example of MSstatsTMT PSM sheet from MaxQuant. It is the input for OpenMStoMSstatsTMTFormat function. It includes peak intensities for 10 proteins among 27 MS runs from three TMT10 mixtures. The important variables are as follows:
Usage
raw.om
Format
A data frame with 860 rows and 13 variables.
Details
RetentionTime
ProteinName
PeptideSequence
Charge
Channel
Condition
BioReplicate
Run
Mixture
TechRepMixture
Fraction
Intensity
Reference
Examples
head(raw.om)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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