plot_contour: Generates a contour plot

In VoisinneG/flowR: R-shiny interface for the analysis of flow cytometry data

Description

Generates a contour plot

Usage

plot_contour(args = list())

Arguments

args

list of arguments. Mandatory arguments : a data.frame 'df', x and y plot variable 'xvar' and 'yvar'. Other arguments can include : 'color_var' : variable used for the aesthetic 'color' 'group_var' : variable used for the aesthetic 'group' 'show_outliers' : logical; Display all cells in the background 'fill' : fill parameter for contour plot (passed to 'ggplot2::stat_density_2d()') 'bins' : number of grid points in each direction. (passed as parameter 'n' to 'ggplot2::geom_density_2d()') 'alpha' : contour line transparency (between 0 and 1). If 'show_outliers' is TRUE, used to set outliers dot transparency. 'size' : contour line size. If 'show_outliers' is TRUE, used to set outliers dot size.

VoisinneG/flowR documentation built on June 1, 2021, 6:42 p.m.