plot_gate: Plot a gate from a GatingSet

In VoisinneG/flowR: R-shiny interface for the analysis of flow cytometry data

Description

Plot a gate from a GatingSet

Usage

plot_gate(
  gate_name,
  df = NULL,
  gs,
  sample = NULL,
  spill = NULL,
  metadata = NULL,
  plot_type = "hexagonal",
  plot_args = list(),
  options = list()
)

Arguments

gate_name	name of the gate
df	a data.frame with plot data resulting from a call of get_plot_data. Supersedes parameters 'gs', 'sample', 'spill', 'metadata'
gs	a GatingSet
sample	Set of samples from 'gs'
spill	compensation
metadata	a data.frame containing metadata associated to samples. Must have a column name used for mapping.
plot_type	name of the plot type
plot_args	list of plot parameters passed to plot_gs()
options	list of plot format options passed to format_plot()

VoisinneG/flowR documentation built on June 1, 2021, 6:42 p.m.