plot_gs_ggcyto: Plot a GatingSet

In VoisinneG/flowR: R-shiny interface for the analysis of flow cytometry data

Description

Plot a GatingSet

Usage

plot_gs_ggcyto(
  gs,
  sample = NULL,
  subset = NULL,
  spill = NULL,
  metadata = NULL,
  gate_name = NULL,
  plot_type = "hexagonal",
  plot_args = list(),
  options = list()
)

Arguments

gs	a GatingSet
sample	Names of samples from the GatingSet (as returned by pData(gs)$name)
subset	Names of subsets from the GatingSet (as returned by gs_get_pop_paths(gs))
spill	spillover matrix. If NULL, uncompensated data is used for gating and plotting.
metadata	a data.frame containing metadata associated to samples. Must have a column name used for mapping.
gate_name	Names of the gates to add to the plot (if it is compatible with plot parameters). Ignored if NULL.
plot_type	name of the plot type
plot_args	list of plot parameters passed to the plot function. Plot parameters depend on the plot type selected.
options	list of plot format options passed to format_plot()

Value

a plot

VoisinneG/flowR documentation built on June 1, 2021, 6:42 p.m.