Man pages for VoisinneG/pannot
Annotate and perform annotation enrichment analysis within sets of proteins or genes
| annotation_enrichment_analysis | Perform enrichment analysis |
| create_summary_table_PPI | Retrieve protein-protein interaction information from... |
| filter_annotation_results | Plot the result of the annotation enrichment analysis |
| get_annotations_enrichr | Get annotations using enrichR |
| get_annotations_KEGG | Create a data.frame with KEGG pathways corrresponding to a... |
| get_annotations_uniprot | Create a data.frame with UniProt annotations corrresponding... |
| get_PPI_from_BioGRID | Retrieve protein-protein interaction information from BioGRID |
| get_PPI_from_HPRD | Retrieve protein-protein interaction information from HPRD |
| identify_reviewed_proteins_ids | Identify which protein IDs correspond to SwissProt reviewed... |
| parse_ids | Parse protein ids. This is useful to remove additionnal... |
| plot_annotation_results | Plot the result of the annotation enrichment analysis |
| retrieve_all_KEGG_pathways | Create a data.frame with all KEGG pathways for a given... |
