filter_annotation_results: Plot the result of the annotation enrichment analysis

In VoisinneG/pannot: Annotate and perform annotation enrichment analysis within sets of proteins or genes

Plot the result of the annotation enrichment analysis

Description

Plot the result of the annotation enrichment analysis

Usage

filter_annotation_results(
  df,
  p_val_max = 0.05,
  method_adjust_p_val = "fdr",
  fold_change_min = 2,
  N_annot_min = 2,
  test_depletion = FALSE
)

Arguments

df	a formatted data.frame obtained by the function annotation_enrichment_analysis()
p_val_max	threshold for the enrichment p-value
method_adjust_p_val	method to adjust p-value for multiple comparisons
fold_change_min	threshold for the enrichment fold-change
N_annot_min	minimum number of elements that are annotated in the foreground set
test_depletion	logical, test for annotation depletion as well as enrichment

Value

a data.frame

VoisinneG/pannot documentation built on July 5, 2023, 4:19 p.m.