parse_ids: Parse protein ids. This is useful to remove additionnal...

In VoisinneG/pannot: Annotate and perform annotation enrichment analysis within sets of proteins or genes

Parse protein ids. This is useful to remove additionnal information such as isoform or entry name.

Description

Parse protein ids. This is useful to remove additionnal information such as isoform or entry name.

Usage

parse_ids(x, sep_split = ";", sep_secondary = c("|", "-"), sep_collapse = ";")

Arguments

x	Character string with protein ids
sep_split	Character separating different protein ids
sep_secondary	Character separating UniProt entry from other infromation in protein ids
sep_collapse	Character used to separate different protein ids after parsing

Examples

ids <- "A2AMW0|A2AMW0_MOUSE; P47757-2|CAPZB_MOUSE; P47757-4|CAPZB_MOUSE; Q3TVK4|Q3TVK4_MOUSE"
parse_ids(ids, sep = "; ", sep_secondary=c("|", "-"), sep_collapse = ";")

ids <- c("Q5SWU9|ACACA_MOUSE", "Q9ES52-2|SHIP1_MOUSE; Q9ES52|SHIP1_MOUSE", "Q8VDD5|MYH9_MOUSE")
parse_ids(ids, sep = "; ", sep_secondary=c("|", "-"), sep_collapse = ";")

VoisinneG/pannot documentation built on July 5, 2023, 4:19 p.m.