plot_annotation_results: Plot the result of the annotation enrichment analysis

In VoisinneG/pannot: Annotate and perform annotation enrichment analysis within sets of proteins or genes

Plot the result of the annotation enrichment analysis

Description

Plot the result of the annotation enrichment analysis

Usage

plot_annotation_results(
  df,
  method_adjust_p_val = "fdr",
  fold_change_limits = c(1, 4),
  save_file = NULL,
  filter = FALSE,
  type = "seq",
  flip = FALSE,
  angle = 90,
  font_size = 10,
  trans = NULL,
  scale_factor_width = 1,
  scale_factor_height = 1,
  ...
)

Arguments

df	a formatted data.frame obtained by the function annotation_enrichment_analysis()
method_adjust_p_val	name of the p-value variable. Possible choices : "none","fdr" or "bonferroni". By default : "fdr".
fold_change_limits	limits for fold-change scale. By default : c(1,4).
save_file	path where the plot will be saved
filter	Apply filtering to annotation results (using filter_annotation_results())
type	Palette type (one of seq (sequential), div (diverging))
flip	flip x-y coordinates
angle	angle of x tick labels
font_size	font size
trans	trans object applied to fill scale
scale_factor_width	factor to adjust plot width
scale_factor_height	factor to adjust plot height
...	parameters passed to function filter_annotation_results()

Value

a plot

VoisinneG/pannot documentation built on July 5, 2023, 4:19 p.m.