identify_reviewed_proteins_ids: Identify which protein IDs correspond to SwissProt reviewed...

View source: R/pannot.R

identify_reviewed_proteins_idsR Documentation

Identify which protein IDs correspond to SwissProt reviewed entries

Description

Identify which protein IDs correspond to SwissProt reviewed entries

Usage

identify_reviewed_proteins_ids(ids, sep = ";", organism = NULL)

Arguments

ids

vector of protein ids

sep

character separating different protein ids

organism

taxon id (10090 for Mus musculus, 9606 for human). If null, the most represented organism for ten first protein ids is chosen.

Value

a data.frame with columns 'id' and 'reviewed'

Examples

res <- queryup::query_uniprot(query=list("gene_exact"="Pik3r1", "organism_id"="10090"))
identify_reviewed_proteins_ids(res$Entry)

VoisinneG/pannot documentation built on July 5, 2023, 4:19 p.m.