Man pages for W-Mohammed/calibrater
Calibration of Decision-Analytic Models
| assign_extraArgs_ | Assign extra arguments/parameters in parent function |
| backTransform | Back transform parameters values |
| calculate_likelihood | Calculate likelihood |
| calculate_posterior | Calculate posterior (one set of parameters at a time) |
| calculate_posteriors | Calculate posterior densities |
| calculate_prior | Calculate prior (one set of parameters at a time) |
| calculate_priors | Calculate priors |
| calibrateModel_beyesian | Calibrate models using Bayesian methods - employing local... |
| calibrateModel_beyesian2 | Calibrate models using Bayesian methods - employing... |
| calibrateModel_directed | Calibrate model using Directed search algorithms... |
| calibR_R6 | R6 Class representing a calibR_R6 calibration machine. |
| calibTest_rosen | Rosenbrock function |
| CRS_markov | Cancer Relative Survival (CRS) 3-State Markov Model |
| CRS_markov_2 | Cancer Relative Survival (CRS) 3-State Markov Model |
| effective_sample_size | Estimate Effective Sample Size from Bayesian calibration... |
| fitness_contour_area | Get the minimum and maximum values for the x and y axis |
| get_clean_method_name | Get cleaner calibration methods names |
| get_gof_contour_plot_title | Create contour plot title based on the calibration method and... |
| get_target_plot_title | Create plot title based on the calibration method and its... |
| HID_markov | Hypothetical Infectious Disease (HID) Markov Model |
| HID_markov_2 | Hypothetical Infectious Disease (HID) Markov Model with... |
| HID_markov_3 | Hypothetical Infectious Disease (HID) Markov Model with... |
| IMIS_ | Incremental Mixture Importance Sampling (IMIS) - amended... |
| import_plots_fonts | Download and install Google fonts. |
| LLK_GOF | A function to estimate log likelihood (LLK) goodness-of-fit |
| logit_to_prob | Convert logit to probability |
| log_likelihood | Calculate log likelihood (LLK) |
| log_posterior | Calculate log posterior (one set of parameters at a time) |
| log_posteriors | Calculate log posteriors |
| log_prior | Calculate log prior (one set of parameters at a time) |
| log_priors | Calculate log prior |
| name_HID_params | Helper function to set the hypothetical infectious disease... |
| pipe | Pipe operator |
| plot_fitness_contour | Plot fitness function contour |
| plot_fitness_function | Draw fitness function(s) contour plots |
| plot_pri_post_distributions | Plot prior-posterior distributions |
| plot_targets | Plot observed and simulated targets |
| prob_to_logit | Convert probability to logit |
| PSA_calib_values | Merge calibration outputs and sample PSA values |
| run_demo_App | Run the example shiny app. |
| run_PSA | Run Probabilistic Sensitivity Analysis (PSA) for a Decision... |
| sample_prior_FGS | Use Full Factorial Grid Sampling (FGS) to sample from prior... |
| sample_prior_FGS_ | Use Full Factorial Grid Sampling (FGS) to sample from prior... |
| sample_prior_IMIS | Use Latin Hypercube Sampling (LHS) to sample from prior for... |
| sample_prior_LHS | Use Latin Hypercube Sampling (LHS) to sample from prior... |
| sample_prior_RGS | Use Random Grid Sampling (RGS) to sample from prior... |
| sample_prior_RGS_ | Use Random Grid Sampling (RGS) to sample from prior... |
| SS_markov | Sick-Sicker (SS) Markov model |
| SS_MicroSim | Sick-Sicker (SS) Micro-simulation model |
| summ_optim | Summarise and/or create uncertainty estimates from the... |
| wSSE_GOF | A function to estimate weighted sum of squared errors (WSSE)... |
