Files in WHG1990/CCTools
A suite of tools for analysing CC-seq data.
.DS_Store
.Rbuildignore
.Rhistory
.gitattributes
.gitignore
CCPackageUsage.R
CCTools.Rproj
DESCRIPTION
LICENSE.md
NAMESPACE
R/.DS_Store
R/.Rhistory
R/CCAnnotate.R
R/CCAverage.R
R/CCBin.R
R/CCFold.R
R/CCHSplotter.R
R/CCList.R
R/CCMap.R
R/CCMask.R
R/CCOffset.R
R/CCOffsetfilter.R
R/CCPileup.R
R/CCPipeline.R
R/CCPool.R
R/CCSearch.R
R/CCSeqbias.R
R/CCSplit.R
R/CCTally.R
R/CCThreshold.R
R/CCWrite.R
R/CCalibrate.R
R/FullMap2bedGraph.R
R/MreadR.R
R/VX.R
R/featureplotter.R
R/hannSlide.R
R/hs.R
R/loadRDataG.R
R/lociRead.R
R/polygon2.R
R/rounddown.R
R/roundup.R
R/wrap.it.R
data/.DS_Store
data/ARS_consensus.rda
data/ARS_consensus_noChr12.rda
data/Cer3H4L2MATa_genome.rda
data/Cer3H4L2_AllElementsDUB.rda
data/Cer3H4L2_CTSS_positions_forwhich_GSE36958_meiosis_available.rda
data/Cer3H4L2_CTSS_positions_forwhich_GSE36958_vegetative_available.rda
data/Cer3H4L2_centro.rda
data/Cer3H4L2_chromlengths.rda
data/Cer3H4L2_genome.rda
data/Cer3_TSS_positions_forwhich_GSE36958_meiosis_available.rda
data/Cer3_TSS_positions_forwhich_GSE36958_vegetative_available.rda
data/GSE36063_nucleoChemUnique.rda
data/GSM1712311_Fig4_G1_releasing_60min_IP.rda
data/GSM1712313_Fig4_G1_releasing_75min_IP.rda
data/GSM1712323_Fig6_Scc1_IP.rda
data/GSM739669_Rec8_4h_Cer3H4L2.rda
data/MJ315Average.rda
data/MNase_Veg_GSM1849297_GSM1849298_R1R2.rda
data/MNase_meiosis_GSM1424408.rda
data/PanHS.rda
data/Spo11oligosAverage.rda
data/W303_centro.rda
data/W303_chromlengths.rda
data/WS220_chromlengths.rda
data/hg19_chromlengths.rda
data/pombase220208_ARS.rda
data/pombase220208_AllElements.rda
data/pombase220208_TSS_TTS.rda
data/pombase220208_centro.rda
data/pombase220208_chromlengths.rda
data/pombase220208_genome.rda
functionsgen.R
man/AppendMe.Rd
man/CCAnnotate.Rd
man/CCAverage.Rd
man/CCBin.Rd
man/CCFold.Rd
man/CCHSplotter.Rd
man/CCList.Rd
man/CCMap.Rd
man/CCMask.Rd
man/CCOffset.Rd
man/CCOffset.filter.Rd
man/CCPileup.Rd
man/CCPipeline.Rd
man/CCPool.Rd
man/CCSearch.Rd
man/CCSeqbias.Rd
man/CCSeqbias2.Rd
man/CCSplit.Rd
man/CCTally.Rd
man/CCThreshold.Rd
man/CCWrite.Rd
man/CCalibrate.Rd
man/CCfoldHS.binning.Rd
man/CCfoldHS.binpileup.Rd
man/CCfoldHS.calc.Rd
man/CCfoldHS.smoother.Rd
man/FullMap2bedGraph.Rd
man/HS.totals.Rd
man/MreadR.Rd
man/VX.Rd
man/VX.raw.Rd
man/featureplotter.Rd
man/hannSlide.Rd
man/loadRData.Rd
man/loadRDataG.Rd
man/lociRead.Rd
man/mitoCCalibrate.Rd
man/mitoCCalibrate2.Rd
man/polygon2.Rd
man/rDNACCalibrate.Rd
man/rounddown.Rd
man/roundup.Rd
man/smooth_plotter.Rd
man/strainTimeSplit.Rd
man/vec2str.Rd
man/wrap.it.Rd
test.R
test.bw
