VX.raw: VX.raw

In WHG1990/CCTools: A suite of tools for analysing CC-seq data.

VX.raw

Description

VariableX smoother which takes a sparse CCseq dataframe or datatable (colnames = c("Chr", "Pos", "Watson", "Crick)), and smooths both the y dimension ("Watson" and "Crick"), and the x dimension ("Pos"). A sliding mean height and mean position of Fsize number of hits is calculated.

Usage

VX.raw(df, x, y, Fsize = 101, norm.factor = 3, keepdf = TRUE)

Arguments

x	A sparse CCseq dataframe or datatable (colnames = c("Chr", "Pos", "Watson", "Crick)). E.g the "sae2.0" table generated within mapper.
Fsize	The number of single strand sites (non-zero "Watson" or "Crick" rows) or double-stranded sites ("Total" rows) over which to smooth. This is the number of values that will be averaged, NOT the distance in bp.

Author(s)

George Brown

WHG1990/CCTools documentation built on June 16, 2024, 1:36 a.m.