CCalibrate: CCalibrate

In WHG1990/CCTools: A suite of tools for analysing CC-seq data.

CCalibrate

Description

Calibrates a CCseq DSBList.

Usage

CCalibrate(
  DSBList,
  Nc = rep(1, length(DSBList)),
  Nx = rep(1000, length(DSBList)),
  Mreads_X = Mreads,
  Mreads_C
)

Arguments

DSBList	A DSBList formatted input.
Nc	A vector describing the number of control cells, or amount of control DNA added to each sample. The absolute number is not very important.
Nx	A vector describing the number of experimental cells, or amount of experimental DNA in each sample. The absolute number is not very important.
Mreads_X	A vector of Mreads aligning to experimental genome.
Mreads_C	A vector of Mreads aligning to control genome.

Author(s)

Will Gittens

WHG1990/CCTools documentation built on June 16, 2024, 1:36 a.m.