CCfoldHS.calc: CCfoldHS.calc

In WHG1990/CCTools: A suite of tools for analysing CC-seq data.

CCfoldHS.calc

Description

Performs log2(x/y) for a column in a hotspot table

Usage

CCfoldHS.calc(
  p.dir = getwd(),
  s.dir,
  c.dir,
  coln = "NormHpMChr",
  readfilename = "Hotspot.Table",
  constant = 0
)

Arguments

p.dir	Parent directory
s.dir	sample directory containing hotspot tables to be x in log2(x/y)
c.dir	sample directory containing hotspot tables to be y in log2(x/y)
coln	name of the column to be used in log2(x/y)
readfilename	name of the read pattern

Examples

CCfoldHS.calc(c.dir="/Users/georgebrown/Desktop/foldhsdev/oligosae2d",
s.dir="/Users/georgebrown/Desktop/foldhsdev/s1",
p.dir=getwd(),coln="NormHpM")

WHG1990/CCTools documentation built on June 16, 2024, 1:36 a.m.