CCMask: CCMask

In WHG1990/CCTools: A suite of tools for analysing CC-seq data.

CCMask

Description

removes mtDNA,rDNAand 2-micron plasmid from Fullmaps

Usage

CCMask(
  path.name = getwd(),
  in.mode = "fullmap",
  genome = "Cer3H4L2",
  rDNA = F,
  mtDNA = F,
  twomicron = F,
  write = T
)

Arguments

path.name	A character string defining the RDS file or folder containing FullMaps.
in.mode	Reading in .RDS file or a folder of FullMaps? Choose "rds" or "fullmap". Defaults to "rds".
genome	"Cer3H4L2" or "pombase2202028" are implemented at the moment. The pombase220208 reference is chromosomes 1—3 plus the mtDNA (4).
rDNA	Mask out the rDNA by setting rDNA = F.
mtDNA	Mask out the mtDNA by setting mtDNA = F.
twomicron	Mask out the twomicron by setting twomicron = F.

Author(s)

Will Gittens

WHG1990/CCTools documentation built on June 16, 2024, 1:36 a.m.