NEWS.md

In WTaoUMC/RegEnrich: Gene regulator enrichment analysis

RegEnrich 1.3.1

• Change the email from [e-mail] to [e-mail]

RegEnrich 1.1.0

• Bump the version number according to the Bioconductor.

RegEnrich 1.0.1

• Fix the bug: object 'print.tbl' not found.

RegEnrich 1.0.0

• Bump the version number because of the release of Bioconductor.

RegEnrich 0.99.19

• Fix bugs in .regSEA function.

RegEnrich 0.99.18

• Update R version dependency to 4.0.0.

RegEnrich 0.99.17

• Fix bugs of regenrich_diffExpr function.
• Add an example for %>%.
• Use Authors@R [cre] designation.

RegEnrich 0.99.16

• Import magrittr

RegEnrich 0.99.15

• Fix a bug in regenrich_rankScore function.
• Reexport pipe %>%.

RegEnrich 0.99.14

• Add \donttest tags.
• Optimize COEN function.
• Replace bplapply by lapply in pickSoftThreshold2 function.

RegEnrich 0.99.13

• Fix bugs of plotSoftPower on Windows.
• Hide documentations of COEN and GRN functions.
• Remove doParallel package from imports.

RegEnrich 0.99.12

• Remove .Rpoj file.

RegEnrich 0.99.11

• Remove \dontrun tags from all examples.
• Remove lazyData: true from DESCRIPTION.
• Formatting vignettes using BiocStyle.
• Replace NEWS file by NEWS.md file to track changes to the package.
• Some packages in Imports are moved to Depends in DESCRIPTION file.
• DeaSet class inherits SummarizedExperiment class.
• RegenrichSet class inherits DeaSet class.
• TopNetwork class inherits BiocSet class.
• topResult and allResult slots of Enrich object are tibble rather than data frame.
• Score class inherits tibble.
• The show methods for DeaSet, TopNetwork, Enrich, Score, and RegenrichSet object have been optimized.

RegEnrich 0.99.1

• Submission to Bioconductor.

WTaoUMC/RegEnrich documentation built on Aug. 4, 2021, 4:11 p.m.